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El Niño potential effects on the tomato crop

05/06/2026

2026 season
Sophie Colvine
Africa

On 2 June 2026, the World Meteorological Organization (WMO) has issued an authoritative climate alert, projecting an 80% likelihood that a new El Niño event will officially lock in between June and August 2026. Forecasters are exceptionally confident in the system’s longevity, tracking a 90% probability that conditions will persist through at least November. Fuelled by a massive tropical Pacific heat reservoir with subsurface temperatures measuring a staggering 6°C above average, consensus models indicate this upcoming cycle will be at least moderate, with a distinct potential to become severe.

WMO Secretary-General Celeste Saulo warned that communities worldwide must immediately prepare for volatile environmental disruptions, including intensified droughts, torrential rainfall, and extreme heatwaves. This rapidly developing system threatens to mirror the powerful 2023–2024 El Niño, which famously propelled global temperatures to record-breaking heights. “El Niño conditions will pour fuel on the fire of a warming world,” warned UN Secretary-General António Guterres.

Stressing that the resulting impacts will cross international borders with devastating speed, Guterres called on global leaders to treat the arrival as an urgent mandate to protect vulnerable populations, deploy robust early warning systems, and aggressively accelerate the transition toward renewable energy.

A strong El Niño cycle can present a very specific set of challenges for the global processing tomato industry as it can affect some of the major centres of production. Based on previous major El Niño episodes—most notably 1997–1998, 2015–2016, and 2023–2024—here is the likely global impact on the crop.

Typical effects of El Niño on major tomato processing regions

California

Historically, a strong El Niño acts as a double-edged sword. It typically brings heavy winter and late-spring rainstorms to California. While water is good, timing is everything. Excessive rain in March, April, and May delays the transplanting into the fields. Delayed planting pushes the harvest window deep into September and October. This leaves the ripening fruit highly vulnerable to early autumn rains, which can lower the Brix and trigger devastating outbreaks of mold, fruit rot, and bacterial tomato speck.
The 1997–1998 Super El Niño hammered California’s processing tomato sector. The USDA noted at the time that the 1998 crop was drastically smaller, significantly delayed, and ravaged by wet-weather diseases, causing a sharp dip in global paste inventories.

South America 

  • Chile: During strong El Niño years, Central Chile experiences dramatically increased rainfall and a high risk of flash flooding. Similar to California, this disrupts spring planting and threatens late-season harvests with rot.
  • Brazil: El Niño typically triggers severe droughts in northern Brazil but unseasonably heavy, severe rainfall in the southern agricultural states. This complicates field machinery access and increases reliance on heavy fungicide applications to save the crops.
  • Argentina: In the western Cuyo region (Mendoza and San Juan), atmospheric instability triggers fierce convective storms and catastrophic hail that can instantly shred entire fields. Yet, the heavy mountain snowfall provides a crucial silver lining: massive reservoir recharge that secures water rights for the subsequent two growing seasons.
  • Peru: The arid coastal valleys, which usually enjoy stable desert conditions perfect for tomatoes, experiences some of the most violent and immediate agricultural disruptions during a strong El Niño due to the rapid warming of adjacent Pacific waters.

The Mediterranean area

Here, the correlation between El Niño and Mediterranean weather is less direct than it is in the Americas. However, historical data shows El Niño years often correlate with more volatile, intense summer heatwaves across Southern Europe. Extreme temperatures above 35°C during summer flowering can cause blossom drop, where the plants fail to set fruit, ultimately capping overall yield potential.

China 

Xinjiang’s and Inner Mongolia’s continental climate is largely insulated from direct El Niño ocean dynamics, but it can lead to very high temperatures which may negatively impact blossom and fruit set.

Australia 

El Niño brings hotter, significantly drier conditions to southeastern Australia. The immediate threat is water scarcity. Irrigation water allocation prices in the Murray-Darling Basin often skyrocket during drought years, dramatically increasing production costs for growers. Furthermore, prolonged heatwaves exceeding 35°C can cause blossom drop and cause sunscald on ripening tomatoes. On the upside, the dry weather drastically reduces fungal diseases, black mold, and rot. If growers have secured water rights, they often see an uninterrupted harvest with exceptionally high Brix levels.

South Africa 

In the dominant Limpopo Province, El Niño generally brings intense summer heatwaves and severe drought. Plummeting water reserves force processors to scale back their planted acreage significantly, while extreme solar radiation causes widespread sunscald, ruining fruit quality before it can be mechanically harvested.

Regional Risk Profile Summary

Region Typical El Niño Weather Shift Primary Threat to Processing Tomatoes
California Wet, cool winters & late spring rains Delayed planting, compressed harvest, autumn fruit rot
Chile Increased rainfall & flash flood risks Muddy fields blocking machinery, root rot, delayed cycles
Brazil  Increased rainfall Muddy fields blocking machinery and disease outbreaks 
Argentina Convective hail & harvest rains High localized crop damage risk but good long-term water
Peru Flooding, high humidity, warm nights Severe risk of total crop failure and disease outbreaks
Mediterranean area Limited but can bring unpredictable, intense summer heatwaves Blossom drop, accelerated crop maturity, water constraints
China Weak direct correlation Blossom drop if high temperatures.
Australia High water prices & heatwaves Reduced yields but excellent fruit quality/Brix

Background

El Niño and La Niña are the opposite phases of ENSO, which is short for El Niño-Southern Oscillation. Operating in the tropical Pacific Ocean, ENSO is Earth’s singlest most influential natural climate pattern. El Niño and La Niña alternately warm and cool large areas of the tropical Pacific—the world’s largest ocean—which significantly influences where and how much it rains there. The primary location of moist, rising air (over the basin’s warmest water) is centered over the central or eastern Pacific during El Niño and over Indonesia and the western Pacific during La Niña. Like a boulder in a stream, this relocation disrupts the atmospheric circulation patterns that connect the tropics with the middle latitudes, which in turn modifies the mid-latitude jet streams. By modifying the jet streams, ENSO can affect temperature and precipitation across the United States and other parts of the world.  The maps show how El Niño commonly affects Northern Hemisphere winter and summer climate patterns around the globe. Notice that there are no consistent impacts on North America during the summer months, while areas around the tropics and Southern Hemisphere subtropics (Australia, for example) experience impacts in both seasons.
Source: NOAA

Sources: WMO, NOAA, WPTC